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ASU Scholarship Showcase


Date Range
2006 2018

Computer simulations of the Ising model exhibit white noise if thermal fluctuations are governed by Boltzmann's factor alone; whereas we find that the same model exhibits 1/f noise if Boltzmann's factor is extended to include local alignment entropy to all orders. We show that this nonlinear correction maintains maximum entropy during equilibrium fluctuations. Indeed, as with the usual way to resolve Gibbs' paradox that avoids entropy reduction during reversible processes, the correction yields the statistics of indistinguishable particles. The correction also ensures conservation of energy if an instantaneous contribution from local entropy is included. Thus, a common mechanism for 1/f ...

Contributors
Chamberlin, Ralph, Nasir, Derek, College of Liberal Arts and Sciences, et al.
Created Date
2014-07-30

Mexicans and Mexican Americans have resided in Arizona since the early 16th century. Their history, however, is severely under-documented in the state’s archival repositories. As of 2012, this community is represented in a mere 1-2% of the state’s known archival holdings, and 98% of such documentation is held at Arizona State University’s Chicano/a Research Collection (CRC). This article provides a historical review of the CRC’s establishment in 1970 and how its founding Curator, Dr. Christine Marín, transformed a small circulating book collection into Arizona’s largest repository for Mexican American history. It goes on to examine how the CRC’s sitting Archivist ...

Contributors
Godoy-Powell, Nancy L., Dunham, Elizabeth G.
Created Date
2017-01-27

Remote sensors like Doppler lidars can map the winds with high accuracy and spatial resolution. One shortcoming of lidars is that the radial velocity measured by the lidar does not give a complete picture of the windfield necessitating additional data processing to reconstruct the windfield. Most of the popular vector retrieval algorithms rely on the homogenous wind field assumption which plays a vital role in reducing the indeterminacy of the inverse problem of obtaining Cartesian velocity from radial velocity measurements. Consequently, these methods fail in situations where the flow is heterogeneous e.g., Turbine wakes. Alternate methods are based either on ...

Contributors
Cherukuru, Nihanth, Calhoun, Ronald, Krishnamurthy, Raghavendra, et al.
Created Date
2017-10

MicroRNAs (miRNAs) are short non-coding RNAs that regulate gene output at the post-transcriptional level by targeting degenerate elements primarily in 3′untranslated regions (3′UTRs) of mRNAs. Individual miRNAs can regulate networks of hundreds of genes, yet for the majority of miRNAs few, if any, targets are known. Misexpression of miRNAs is also a major contributor to cancer progression, thus there is a critical need to validate miRNA targets in high-throughput to understand miRNAs' contribution to tumorigenesis. Here we introduce a novel high-throughput assay to detect miRNA targets in 3′UTRs, called Luminescent Identification of Functional Elements in 3′UTRs (3′LIFE). We demonstrate the ...

Contributors
Wolter, Justin, Kotagama, Kasuen, Pierre-Bez, Alexandra C., et al.
Created Date
2014-09-29

We previously reported a recombinant protein production system based on a geminivirus replicon that yields high levels of vaccine antigens and monoclonal antibodies in plants. The bean yellow dwarf virus (BeYDV) replicon generates massive amounts of DNA copies, which engage the plant transcription machinery. However, we noticed a disparity between transcript level and protein production, suggesting that mRNAs could be more efficiently utilized. In this study, we systematically evaluated genetic elements from human, viral, and plant sources for their potential to improve the BeYDV system. The tobacco extensin terminator enhanced transcript accumulation and protein production compared to other commonly used ...

Contributors
Diamos, Andy, Rosenthal, Sun, Mason, Hugh, et al.
Created Date
2016-02-24

Methodologists have developed mediation analysis techniques for a broad range of substantive applications, yet methods for estimating mediating mechanisms with missing data have been understudied. This study outlined a general Bayesian missing data handling approach that can accommodate mediation analyses with any number of manifest variables. Computer simulation studies showed that the Bayesian approach produced frequentist coverage rates and power estimates that were comparable to those of maximum likelihood with the bias-corrected bootstrap. We share an SAS macro that implements Bayesian estimation and use 2 data analysis examples to demonstrate its use.

Contributors
Enders, Craig, Fairchild, Amanda J., MacKinnon, David, et al.
Created Date
2013

During the last 40 years evidence from systematic case study analysis and behavioral experiments have provided a comprehensive perspective on how communities can manage common resources in a sustainable way. The conventional theory based on selfish rational actors cannot explain empirical observations. A more comprehensive theoretical framework of human behavior is emerging that include concepts such as trust, conditional cooperation, other-regarding preferences, social norms, and reputation. The new behavioral perspective also demonstrates that behavioral responses depend on social and biophysical context.

Contributors
Janssen, Marco, Julie Ann Wrigley Global Institute of Sustainability, School of Sustainability, et al.
Created Date
2015-02-01

Presented in this paper is a bi-directional out-of-plane actuator which combines the merits of the electrostatic repulsive principle and the electrostatic attractive principle. By taking advantage of the electrostatic repulsive mode, the common “pull-in” instability can be lessened to enlarge the displacement, and by applying the electrostatic attractive mode, the out-of-plane displacement is further enlarged. The implications of changing the actuator’s physical dimensions are discussed, along with the two-layer polysilicon surface microfabrication process used to fabricate such an actuator. The static characteristics of the out-of-plane displacement versus the voltage of both modes are tested, and displacements of 1.4 μm and ...

Contributors
Ren, Hao, Wang, Weimin, Tao, Fenggang, et al.
Created Date
2013-12-05

Biophotovoltaic devices employ photosynthetic organisms at the anode of a microbial fuel cell to generate electrical power. Although a range of cyanobacteria and algae have been shown to generate photocurrent in devices of a multitude of architectures, mechanistic understanding of extracellular electron transfer by phototrophs remains minimal. Here we describe a mediatorless bioelectrochemical device to measure the electrogenic output of a planktonically grown cyanobacterium, Synechocystis sp. PCC6803. Light dependent production of current is measured, and its magnitude is shown to scale with microbial cell concentration and light intensity. Bioelectrochemical characterization of a Synechocystis mutant lacking Photosystem II demonstrates conclusively that ...

Contributors
Cereda, Angelo, Hitchcock, Andrew, Symes, Mark D., et al.
Created Date
2014-03-17

Background Glycosylated proteins and lipids are important regulatory factors whose functions can be altered by addition or removal of sugars to the glycan structure. The glycans are recognized by sugar-binding lectins that serve as receptors on the surface of many cells and facilitate initiation of an intracellular signal that changes the properties of the cells. We identified a peptide that mimics the ligand of an N-acetylgalactosamine (GalNAc)-specific lectin and asked whether the peptide would express specific biological activity. Findings A 12-mer phage display library was screened with a GalNAc-specific lectin to identify an amino acid sequence that binds to the ...

Contributors
Eggink, Laura, Hoober, Kenneth, College of Liberal Arts and Sciences, et al.
Created Date
2009-02-11

We present stellar evolution models for 0.5 - 1.2 M[subscript ⊙] at scaled metallicities of 0.1 - 1.5 Z[subscript ⊙] and O/Fe values of 0.44 - 2.28 O/Fe[subscript ⊙]. The time dependent evolution of habitable zone boundaries are calculated for each stellar evolution track based on stellar mass, effective temperature, and luminosity parameterizations. The rate of change of stellar surface quantities and the surrounding habitable zone position are strong functions of all three quantities explored. The range of orbits that remain continuously habitable, or habitable for at least 2 Gyr, are provided. The results show that the detailed chemical characterization ...

Contributors
Truitt, Amanda, Young, Patrick, Spacek, Alexander, et al.
Created Date
2015-05-10

Malignant cancers that lead to fatal outcomes for patients may remain dormant for very long periods of time. Although individual mechanisms such as cellular dormancy, angiogenic dormancy and immunosurveillance have been proposed, a comprehensive understanding of cancer dormancy and the “switch” from a dormant to a proliferative state still needs to be strengthened from both a basic and clinical point of view. Computational modeling enables one to explore a variety of scenarios for possible but realistic microscopic dormancy mechanisms and their predicted outcomes. The aim of this paper is to devise such a predictive computational model of dormancy with an ...

Contributors
Chen, Duyu, Jiao, Yang, Torquato, Salvatore, et al.
Created Date
2014-10-16

Due to the limitation of current pharmacological therapeutic strategies, stem cell therapies have emerged as a viable option for treating many incurable neurological disorders. Specifically, human pluripotent stem cell (hPSC)-derived neural progenitor cells (hNPCs), a multipotent cell population that is capable of near indefinite expansion and subsequent differentiation into the various cell types that comprise the central nervous system (CNS), could provide an unlimited source of cells for such cell-based therapies. However the clinical application of these cells will require (i) defined, xeno-free conditions for their expansion and neuronal differentiation and (ii) scalable culture systems that enable their expansion and ...

Contributors
Tsai, Yihuan, Cutts, Joshua, Kimura, Azuma, et al.
Created Date
2015-05-13

Synchronization of neuronal activity is associated with neurological disorders such as epilepsy. This process of neuronal synchronization is not fully understood. To further our understanding, we have experimentally studied the progression of this synchronization from normal neuronal firing to full synchronization. We implemented nine FitzHugh-Nagumo neurons (a simplified Hodgkin-Huxley model) via discrete electronics. For different coupling parameters (synaptic strengths), the neurons in the ring were either unsynchronized or completely synchronized when locally coupled in a ring. When a single long-range connection (nonlocal coupling) was introduced, an intermediate state known as a chimera appeared. The results indicate that (1) epilepsy is ...

Contributors
Arumugam, Easwara Moorthy Essaki, Spano, Mark, Ira A. Fulton Schools of Engineering, et al.
Created Date
2015-01-01

With the advent of high-dimensional stored big data and streaming data, suddenly machine learning on a very large scale has become a critical need. Such machine learning should be extremely fast, should scale up easily with volume and dimension, should be able to learn from streaming data, should automatically perform dimension reduction for high-dimensional data, and should be deployable on hardware. Neural networks are well positioned to address these challenges of large scale machine learning. In this paper, we present a method that can effectively handle large scale, high-dimensional data. It is an online method that can be used for ...

Contributors
Roy, Asim, W.P. Carey School of Business, Computer Information Systems
Created Date
2015-08-10

Potential climate change impacts on summer precipitation and subsequent hydrologic responses in the southwestern U.S. are poorly constrained at present due to a lack of studies accounting for high resolution processes. In this investigation, we apply a distributed hydrologic model to the Beaver Creek watershed of central Arizona to explore its utility for climate change assessments. Manual model calibration and model validation were performed using radar-based precipitation data during three summers and compared to two alternative meteorological products to illustrate the sensitivity of the streamflow response. Using the calibrated and validated model, we investigated the watershed response during historical (1990–2000) ...

Contributors
Hawkins, Gretchen, Vivoni, Enrique, Robles-Morua, Agustin, et al.
Created Date
2015-07-01

Breast cancer persists as the most common cause of cancer death in women worldwide. Ovarian cancer is also a significant source of morbidity and mortality, as the fifth leading cause of cancer death among women. This reflects the continued need for further understanding and innovation in cancer treatment. Though breast and ovarian cancer usually present as distinct clinical entities, the recent explosion of large-scale -omics research has uncovered many overlaps, particularly with respect to genetic and epigenetic alterations. We compared genetic, microenvironmental, stromal, and epigenetic changes common between breast and ovarian cancer cells, as well as the clinical relevance of ...

Contributors
Longacre, Mckenna, Snyder, Nicole A., Housman, Genevieve, et al.
Created Date
2016-05-18

This article identifies equity outcomes associated with three biofuel systems in Brazil, Ethiopia and Guatemala. Acknowledging that winners and losers are socially and politically generated, the article identifies some of the factors behind the distribution of winners and losers along different stages of three sugarcane-ethanol supply chains. Analysing the outcomes for equity within each case study reveals an uneven distribution that we argue is related to the procedure and structure of the given sugarcane-ethanol system, and the recognition of the impacts on different actors within those structures. Increasing equity in sugarcane-ethanol systems will require greater openness in decision making processes, ...

Contributors
Hodbod, Jennifer, Tomei, Julia, Blaber-Wegg, Tina, et al.
Created Date
2015-06-01

Ecological models are a fundamental tool that archaeologists use to clarify our thinking about the processes that generate the archaeological record. Typically, arguments reasoned from a single model are bolstered by observing the consistency of ethnographic data with the argument. This validation of a model establishes that an argument is reasonable. In this paper, we attempt to move beyond validation by comparing the consistency of two arguments reasoned from different models that might explain corporate territorial ownership in a large ethnographic data set. Our results suggest that social dilemmas are an under appreciated mechanism that can drive the evolution of ...

Contributors
Freeman, Jacob, Anderies, John, College of Liberal Arts and Sciences, et al.
Created Date
2015-02-01

Background The extracellular sunscreen scytonemin is the most common and widespread indole-alkaloid among cyanobacteria. Previous research using the cyanobacterium Nostoc punctiforme ATCC 29133 revealed a unique 18-gene cluster (NpR1276 to NpR1259 in the N. punctiforme genome) involved in the biosynthesis of scytonemin. We provide further genomic characterization of these genes in N. punctiforme and extend it to homologous regions in other cyanobacteria. Results Six putative genes in the scytonemin gene cluster (NpR1276 to NpR1271 in the N. punctiforme genome), with no previously known protein function and annotated in this study as scyA to scyF, are likely involved in the assembly ...

Contributors
Soule, Tanya, Palmer, Kendra, Gao, Qunjie, et al.
Created Date
2009-07-24